Update Pi runtime packages

README.md

@@ -25,7 +25,7 @@ curl -fsSL https://feynman.is/install | bash
 irm https://feynman.is/install.ps1 | iex
 ```
 
-The one-line installer fetches the latest tagged release. To pin a version, pass it explicitly, for example `curl -fsSL https://feynman.is/install | bash -s -- 0.2.28`.
+The one-line installer fetches the latest tagged release. To pin a version, pass it explicitly, for example `curl -fsSL https://feynman.is/install | bash -s -- 0.2.29`.
 
 The installer downloads a standalone native bundle with its own Node.js runtime.
 

package.json

@@ -1,6 +1,6 @@
 {
   "name": "@companion-ai/feynman",
-  "version": "0.2.28",
+  "version": "0.2.29",
   "description": "Research-first CLI agent built on Pi and alphaXiv",
   "license": "MIT",
   "type": "module",
@@ -61,16 +61,16 @@
   "dependencies": {
     "@clack/prompts": "^1.2.0",
     "@companion-ai/alpha-hub": "^0.1.3",
-    "@mariozechner/pi-ai": "^0.66.1",
-    "@mariozechner/pi-coding-agent": "^0.66.1",
-    "@sinclair/typebox": "^0.34.48",
-    "dotenv": "^17.3.1"
+    "@mariozechner/pi-ai": "^0.67.6",
+    "@mariozechner/pi-coding-agent": "^0.67.6",
+    "@sinclair/typebox": "^0.34.49",
+    "dotenv": "^17.4.2"
   },
   "overrides": {
-    "basic-ftp": "5.2.2",
+    "basic-ftp": "5.3.0",
     "@modelcontextprotocol/sdk": {
-      "@hono/node-server": "1.19.13",
-      "hono": "4.12.12"
+      "@hono/node-server": "1.19.14",
+      "hono": "4.12.14"
     },
     "express": {
       "router": {
@@ -80,16 +80,17 @@
     "proxy-agent": {
       "pac-proxy-agent": {
         "get-uri": {
-          "basic-ftp": "5.2.2"
+          "basic-ftp": "5.3.0"
         }
       }
     },
+    "protobufjs": "7.5.5",
     "minimatch": {
       "brace-expansion": "5.0.5"
     }
   },
   "devDependencies": {
-    "@types/node": "^25.5.0",
+    "@types/node": "^25.6.0",
     "tsx": "^4.21.0",
     "typescript": "^5.9.3"
   },

prompts/deepresearch.md

@@ -6,6 +6,8 @@ topLevelCli: true
 ---
 Run a deep research workflow for: $@
 
+This is an execution request, not a request to explain or implement the workflow instructions. Carry out the workflow with tools and durable files. Do not answer by describing the protocol, converting it into programming steps, or saying how someone could implement it.
+
 You are the Lead Researcher. You plan, delegate, evaluate, verify, write, and cite. Internal orchestration is invisible to the user unless they ask.
 
 ## 1. Plan

scripts/install/install.ps1

@@ -110,7 +110,7 @@ This usually means the release exists, but not all platform bundles were uploade
 Workarounds:
   - try again after the release finishes publishing
   - pass the latest published version explicitly, e.g.:
-    & ([scriptblock]::Create((irm https://feynman.is/install.ps1))) -Version 0.2.28
+    & ([scriptblock]::Create((irm https://feynman.is/install.ps1))) -Version 0.2.29
 "@
   }
 

scripts/install/install.sh

@@ -261,7 +261,7 @@ This usually means the release exists, but not all platform bundles were uploade
 Workarounds:
   - try again after the release finishes publishing
   - pass the latest published version explicitly, e.g.:
-    curl -fsSL https://feynman.is/install | bash -s -- 0.2.28
+    curl -fsSL https://feynman.is/install | bash -s -- 0.2.29
 EOF
   exit 1
 fi

scripts/prepare-runtime-workspace.mjs

@@ -1,4 +1,5 @@
 import { existsSync, mkdirSync, readdirSync, readFileSync, rmSync, statSync, writeFileSync } from "node:fs";
+import { createHash } from "node:crypto";
 import { resolve } from "node:path";
 import { spawnSync } from "node:child_process";
 
@@ -6,6 +7,8 @@ import { stripPiSubagentBuiltinModelSource } from "./lib/pi-subagents-patch.mjs"
 
 const appRoot = resolve(import.meta.dirname, "..");
 const settingsPath = resolve(appRoot, ".feynman", "settings.json");
+const packageJsonPath = resolve(appRoot, "package.json");
+const packageLockPath = resolve(appRoot, "package-lock.json");
 const feynmanDir = resolve(appRoot, ".feynman");
 const workspaceDir = resolve(appRoot, ".feynman", "npm");
 const workspaceNodeModulesDir = resolve(workspaceDir, "node_modules");
@@ -13,16 +16,29 @@ const manifestPath = resolve(workspaceDir, ".runtime-manifest.json");
 const workspacePackageJsonPath = resolve(workspaceDir, "package.json");
 const workspaceArchivePath = resolve(feynmanDir, "runtime-workspace.tgz");
 const PRUNE_VERSION = 4;
+const PINNED_RUNTIME_PACKAGES = [
+	"@mariozechner/pi-agent-core",
+	"@mariozechner/pi-ai",
+	"@mariozechner/pi-coding-agent",
+	"@mariozechner/pi-tui",
+];
 
 function readPackageSpecs() {
 	const settings = JSON.parse(readFileSync(settingsPath, "utf8"));
-	if (!Array.isArray(settings.packages)) {
-		return [];
+	const packageSpecs = Array.isArray(settings.packages)
+		? settings.packages
+			.filter((value) => typeof value === "string" && value.startsWith("npm:"))
+			.map((value) => value.slice(4))
+		: [];
+
+	for (const packageName of PINNED_RUNTIME_PACKAGES) {
+		const version = readLockedPackageVersion(packageName);
+		if (version) {
+			packageSpecs.push(`${packageName}@${version}`);
+		}
 	}
 
-	return settings.packages
-		.filter((value) => typeof value === "string" && value.startsWith("npm:"))
-		.map((value) => value.slice(4));
+	return Array.from(new Set(packageSpecs));
 }
 
 function parsePackageName(spec) {
@@ -30,10 +46,41 @@ function parsePackageName(spec) {
 	return match?.[1] ?? spec;
 }
 
+function readLockedPackageVersion(packageName) {
+	if (!existsSync(packageLockPath)) {
+		return undefined;
+	}
+	try {
+		const lockfile = JSON.parse(readFileSync(packageLockPath, "utf8"));
+		const entry = lockfile.packages?.[`node_modules/${packageName}`];
+		return typeof entry?.version === "string" ? entry.version : undefined;
+	} catch {
+		return undefined;
+	}
+}
+
 function arraysMatch(left, right) {
 	return left.length === right.length && left.every((value, index) => value === right[index]);
 }
 
+function hashFile(path) {
+	if (!existsSync(path)) {
+		return null;
+	}
+	return createHash("sha256").update(readFileSync(path)).digest("hex");
+}
+
+function getRuntimeInputHash() {
+	const hash = createHash("sha256");
+	for (const path of [packageJsonPath, packageLockPath, settingsPath]) {
+		hash.update(path);
+		hash.update("\0");
+		hash.update(hashFile(path) ?? "missing");
+		hash.update("\0");
+	}
+	return hash.digest("hex");
+}
+
 function workspaceIsCurrent(packageSpecs) {
 	if (!existsSync(manifestPath) || !existsSync(workspaceNodeModulesDir)) {
 		return false;
@@ -44,6 +91,9 @@ function workspaceIsCurrent(packageSpecs) {
 		if (!Array.isArray(manifest.packageSpecs) || !arraysMatch(manifest.packageSpecs, packageSpecs)) {
 			return false;
 		}
+		if (manifest.runtimeInputHash !== getRuntimeInputHash()) {
+			return false;
+		}
 		if (
 			manifest.nodeAbi !== process.versions.modules ||
 			manifest.platform !== process.platform ||
@@ -97,8 +147,8 @@ function prepareWorkspace(packageSpecs) {
 	const result = spawnSync(
 		process.env.npm_execpath ? process.execPath : "npm",
 		process.env.npm_execpath
-			? [process.env.npm_execpath, "install", "--prefer-offline", "--no-audit", "--no-fund", "--no-dry-run", "--loglevel", "error", "--prefix", workspaceDir, ...packageSpecs]
-			: ["install", "--prefer-offline", "--no-audit", "--no-fund", "--no-dry-run", "--loglevel", "error", "--prefix", workspaceDir, ...packageSpecs],
+			? [process.env.npm_execpath, "install", "--prefer-offline", "--no-audit", "--no-fund", "--no-dry-run", "--legacy-peer-deps", "--loglevel", "error", "--prefix", workspaceDir, ...packageSpecs]
+			: ["install", "--prefer-offline", "--no-audit", "--no-fund", "--no-dry-run", "--legacy-peer-deps", "--loglevel", "error", "--prefix", workspaceDir, ...packageSpecs],
 		{ stdio: "inherit", env: childNpmInstallEnv() },
 	);
 	if (result.status !== 0) {
@@ -110,15 +160,16 @@ function writeManifest(packageSpecs) {
 	writeFileSync(
 		manifestPath,
 		JSON.stringify(
-				{
-					packageSpecs,
-					generatedAt: new Date().toISOString(),
-					nodeAbi: process.versions.modules,
-					nodeVersion: process.version,
-					platform: process.platform,
-					arch: process.arch,
-					pruneVersion: PRUNE_VERSION,
-				},
+			{
+				packageSpecs,
+				runtimeInputHash: getRuntimeInputHash(),
+				generatedAt: new Date().toISOString(),
+				nodeAbi: process.versions.modules,
+				nodeVersion: process.version,
+				platform: process.platform,
+				arch: process.arch,
+				pruneVersion: PRUNE_VERSION,
+			},
 			null,
 			2,
 		) + "\n",

src/cli.ts

@@ -558,6 +558,7 @@ export async function main(): Promise<void> {
 		normalizeFeynmanSettings(feynmanSettingsPath, bundledSettingsPath, thinkingLevel, feynmanAuthPath);
 	}
 
+	const workflowCommandNames = new Set(readPromptSpecs(appRoot).filter((s) => s.topLevelCli).map((s) => s.name));
 	await launchPiChat({
 		appRoot,
 		workingDir,
@@ -568,6 +569,6 @@ export async function main(): Promise<void> {
 		thinkingLevel,
 		explicitModelSpec,
 		oneShotPrompt: values.prompt,
-		initialPrompt: resolveInitialPrompt(command, rest, values.prompt, new Set(readPromptSpecs(appRoot).filter((s) => s.topLevelCli).map((s) => s.name))),
+		initialPrompt: resolveInitialPrompt(command, rest, values.prompt, workflowCommandNames),
 	});
 }

tests/content-policy.test.ts

@@ -65,6 +65,8 @@ test("deepresearch workflow requires durable artifacts even when blocked", () =>
 	assert.match(systemPrompt, /Do not claim you are only a static model/i);
 	assert.match(systemPrompt, /write the requested durable artifact/i);
 	assert.match(deepResearchPrompt, /Do not stop after planning/i);
+	assert.match(deepResearchPrompt, /not a request to explain or implement/i);
+	assert.match(deepResearchPrompt, /Do not answer by describing the protocol/i);
 	assert.match(deepResearchPrompt, /degraded mode/i);
 	assert.match(deepResearchPrompt, /Verification: BLOCKED/i);
 	assert.match(deepResearchPrompt, /Never end with only an explanation in chat/i);

tests/package-ops.test.ts

@@ -243,6 +243,10 @@ test("updateConfiguredPackages batches multiple npm updates into a single instal
 		`  console.log(resolve(${JSON.stringify(root)}, "npm-global", "lib", "node_modules"));`,
 		`  process.exit(0);`,
 		`}`,
+		`if (args.length >= 4 && args[0] === "view" && args[2] === "version" && args[3] === "--json") {`,
+		`  console.log(JSON.stringify("2.0.0"));`,
+		`  process.exit(0);`,
+		`}`,
 		`appendFileSync(${JSON.stringify(logPath)}, JSON.stringify(args) + "\\n", "utf8");`,
 		"process.exit(0);",
 	].join("\n"));
@@ -290,6 +294,10 @@ test("updateConfiguredPackages skips native package updates on unsupported Node
 		`  console.log(resolve(${JSON.stringify(root)}, "npm-global", "lib", "node_modules"));`,
 		`  process.exit(0);`,
 		`}`,
+		`if (args.length >= 4 && args[0] === "view" && args[2] === "version" && args[3] === "--json") {`,
+		`  console.log(JSON.stringify("2.0.0"));`,
+		`  process.exit(0);`,
+		`}`,
 		`appendFileSync(${JSON.stringify(logPath)}, JSON.stringify(args) + "\\n", "utf8");`,
 		"process.exit(0);",
 	].join("\n"));

website/package-lock.json

@@ -1544,9 +1544,9 @@
       }
     },
     "node_modules/@hono/node-server": {
-      "version": "1.19.13",
-      "resolved": "https://registry.npmjs.org/@hono/node-server/-/node-server-1.19.13.tgz",
-      "integrity": "sha512-TsQLe4i2gvoTtrHje625ngThGBySOgSK3Xo2XRYOdqGN1teR8+I7vchQC46uLJi8OF62YTYA3AhSpumtkhsaKQ==",
+      "version": "1.19.14",
+      "resolved": "https://registry.npmjs.org/@hono/node-server/-/node-server-1.19.14.tgz",
+      "integrity": "sha512-GwtvgtXxnWsucXvbQXkRgqksiH2Qed37H9xHZocE5sA3N8O8O8/8FA3uclQXxXVzc9XBZuEOMK7+r02FmSpHtw==",
       "license": "MIT",
       "engines": {
         "node": ">=18.14.1"
@@ -7998,9 +7998,9 @@
       }
     },
     "node_modules/hono": {
-      "version": "4.12.12",
-      "resolved": "https://registry.npmjs.org/hono/-/hono-4.12.12.tgz",
-      "integrity": "sha512-p1JfQMKaceuCbpJKAPKVqyqviZdS0eUxH9v82oWo1kb9xjQ5wA6iP3FNVAPDFlz5/p7d45lO+BpSk1tuSZMF4Q==",
+      "version": "4.12.14",
+      "resolved": "https://registry.npmjs.org/hono/-/hono-4.12.14.tgz",
+      "integrity": "sha512-am5zfg3yu6sqn5yjKBNqhnTX7Cv+m00ox+7jbaKkrLMRJ4rAdldd1xPd/JzbBWspqaQv6RSTrgFN95EsfhC+7w==",
       "license": "MIT",
       "engines": {
         "node": ">=16.9.0"

website/package.json

@@ -36,8 +36,8 @@
   },
   "overrides": {
     "@modelcontextprotocol/sdk": {
-      "@hono/node-server": "1.19.13",
-      "hono": "4.12.12"
+      "@hono/node-server": "1.19.14",
+      "hono": "4.12.14"
     },
     "router": {
       "path-to-regexp": "8.4.2"

website/public/install

@@ -261,7 +261,7 @@ This usually means the release exists, but not all platform bundles were uploade
 Workarounds:
   - try again after the release finishes publishing
   - pass the latest published version explicitly, e.g.:
-    curl -fsSL https://feynman.is/install | bash -s -- 0.2.28
+    curl -fsSL https://feynman.is/install | bash -s -- 0.2.29
 EOF
   exit 1
 fi

website/public/install.ps1

@@ -110,7 +110,7 @@ This usually means the release exists, but not all platform bundles were uploade
 Workarounds:
   - try again after the release finishes publishing
   - pass the latest published version explicitly, e.g.:
-    & ([scriptblock]::Create((irm https://feynman.is/install.ps1))) -Version 0.2.28
+    & ([scriptblock]::Create((irm https://feynman.is/install.ps1))) -Version 0.2.29
 "@
   }
 

website/src/content/docs/getting-started/installation.md

@@ -117,13 +117,13 @@ These installers download the bundled `skills/` and `prompts/` trees plus the re
 The one-line installer already targets the latest tagged release. To pin an exact version, pass it explicitly:
 
 ```bash
-curl -fsSL https://feynman.is/install | bash -s -- 0.2.28
+curl -fsSL https://feynman.is/install | bash -s -- 0.2.29
 ```
 
 On Windows:
 
 ```powershell
-& ([scriptblock]::Create((irm https://feynman.is/install.ps1))) -Version 0.2.28
+& ([scriptblock]::Create((irm https://feynman.is/install.ps1))) -Version 0.2.29
 ```
 
 ## Post-install setup

website/src/content/docs/reference/package-stack.md

@@ -22,7 +22,9 @@ These are installed by default with every Feynman installation. They provide the
 | `pi-mermaid` | Render Mermaid diagrams in the terminal UI |
 | `@aliou/pi-processes` | Manage long-running experiments, background tasks, and log tailing |
 | `pi-zotero` | Integration with Zotero for citation library management |
+| `@kaiserlich-dev/pi-session-search` | Indexed session recall with summarize and resume UI. Powers session lookup |
 | `pi-schedule-prompt` | Schedule recurring and deferred research jobs. Powers the `/watch` workflow |
+| `@samfp/pi-memory` | Pi-managed preference and correction memory across sessions |
 | `@tmustier/pi-ralph-wiggum` | Long-running agent loops for iterative development. Powers `/autoresearch` |
 
 These packages are updated together when you run `feynman update`. You do not need to install them individually.
@@ -34,8 +36,6 @@ Install on demand with `feynman packages install <preset>`. These extend Feynman
 | Package | Preset | Purpose |
 | --- | --- | --- |
 | `pi-generative-ui` | `generative-ui` | Interactive HTML-style widgets for rich output |
-| `@kaiserlich-dev/pi-session-search` | `session-search` | Indexed session recall with summarize and resume UI. Powers `/search` |
-| `@samfp/pi-memory` | `memory` | Automatic preference and correction memory across sessions |
 
 ## Installing and managing packages
 
@@ -48,17 +48,9 @@ feynman packages list
 Install a specific optional preset:
 
 ```bash
-feynman packages install session-search
-feynman packages install memory
 feynman packages install generative-ui
 ```
 
-Install all optional packages at once:
-
-```bash
-feynman packages install all-extras
-```
-
 ## Updating packages
 
 Update all installed packages to their latest versions: