From 1fe1ce04a53a9c30df874b5ae36b32596165b14d Mon Sep 17 00:00:00 2001 From: Advait Paliwal Date: Fri, 20 Mar 2026 11:05:58 -0700 Subject: [PATCH] Initial Feynman research agent scaffold --- .env.example | 8 + .gitignore | 5 + .pi/settings.json | 12 + README.md | 87 + experiments/.gitkeep | 1 + extensions/research-tools.ts | 171 + notes/.gitkeep | 1 + outputs/.gitkeep | 1 + package-lock.json | 4117 ++++++++++++++++++++ package.json | 44 + papers/.gitkeep | 1 + prompts/lit-review.md | 13 + prompts/paper-code-audit.md | 12 + prompts/paper-draft.md | 19 + prompts/reading-list.md | 12 + prompts/replicate.md | 14 + skills/research/experiment-design/SKILL.md | 48 + skills/research/literature-review/SKILL.md | 52 + skills/research/paper-code-audit/SKILL.md | 50 + skills/research/paper-writing/SKILL.md | 45 + skills/research/reading-list/SKILL.md | 49 + skills/research/replication/SKILL.md | 52 + src/feynman-prompt.ts | 34 + src/index.ts | 212 + tsconfig.json | 19 + 25 files changed, 5079 insertions(+) create mode 100644 .env.example create mode 100644 .gitignore create mode 100644 .pi/settings.json create mode 100644 README.md create mode 100644 experiments/.gitkeep create mode 100644 extensions/research-tools.ts create mode 100644 notes/.gitkeep create mode 100644 outputs/.gitkeep create mode 100644 package-lock.json create mode 100644 package.json create mode 100644 papers/.gitkeep create mode 100644 prompts/lit-review.md create mode 100644 prompts/paper-code-audit.md create mode 100644 prompts/paper-draft.md create mode 100644 prompts/reading-list.md create mode 100644 prompts/replicate.md create mode 100644 skills/research/experiment-design/SKILL.md create mode 100644 skills/research/literature-review/SKILL.md create mode 100644 skills/research/paper-code-audit/SKILL.md create mode 100644 skills/research/paper-writing/SKILL.md create mode 100644 skills/research/reading-list/SKILL.md create mode 100644 skills/research/replication/SKILL.md create mode 100644 src/feynman-prompt.ts create mode 100644 src/index.ts create mode 100644 tsconfig.json diff --git a/.env.example b/.env.example new file mode 100644 index 0000000..853cf32 --- /dev/null +++ b/.env.example @@ -0,0 +1,8 @@ +# Optional runtime defaults for Feynman. +# Provider credentials are read by pi-coding-agent in the usual ways. + +FEYNMAN_MODEL= +FEYNMAN_THINKING=medium + +OPENAI_API_KEY= +ANTHROPIC_API_KEY= diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..e6b1ddd --- /dev/null +++ b/.gitignore @@ -0,0 +1,5 @@ +node_modules +.env +.feynman +outputs/* +!outputs/.gitkeep diff --git a/.pi/settings.json b/.pi/settings.json new file mode 100644 index 0000000..20c9e23 --- /dev/null +++ b/.pi/settings.json @@ -0,0 +1,12 @@ +{ + "packages": [ + "npm:pi-subagents", + "npm:pi-docparser", + "npm:pi-web-access", + "npm:pi-markdown-preview", + "npm:@kaiserlich-dev/pi-session-search", + "npm:@aliou/pi-processes", + "npm:pi-wandb", + "npm:pi-zotero" + ] +} diff --git a/README.md b/README.md new file mode 100644 index 0000000..e8403fd --- /dev/null +++ b/README.md @@ -0,0 +1,87 @@ +# Feynman + +`feynman` is a research-first agent scaffold built on `@mariozechner/pi-coding-agent`. + +It keeps the useful parts of a coding agent: +- file access +- shell execution +- persistent sessions +- skills +- custom extensions + +But it biases the runtime toward research work: +- literature review +- paper lookup +- replication planning +- experiment design +- writing notes and reports + +The primary paper backend is `@companion-ai/alpha-hub` and your alphaXiv account. +The rest of the workflow is augmented through a curated `.pi/settings.json` package stack. + +## Setup + +```bash +cd /Users/advaitpaliwal/Companion/Code/feynman +npm install +cp .env.example .env +npm run start +``` + +If you already use `pi`, Feynman will reuse the usual auth/config locations for model access. + +Before deep paper work, make sure alphaXiv auth is set up: + +```bash +npx @companion-ai/alpha-hub login +``` + +## Commands + +Inside the REPL: + +- `/help` shows local commands +- `/new` starts a new persisted session +- `/exit` quits +- `/lit-review ` expands the literature-review prompt template +- `/replicate ` expands the replication prompt template +- `/reading-list ` expands the reading-list prompt template +- `/paper-code-audit ` expands the paper/code audit prompt template +- `/paper-draft ` expands the paper-style writing prompt template + +## Custom Tools + +The starter extension adds: + +- `alpha_search` for alphaXiv-backed paper discovery +- `alpha_get_paper` for fetching paper reports or raw text +- `alpha_ask_paper` for targeted paper Q&A +- `alpha_annotate_paper` for persistent local notes +- `alpha_list_annotations` for recall across sessions +- `alpha_read_code` for reading a paper repository + +Feynman uses `@companion-ai/alpha-hub` directly in-process rather than shelling out to the CLI. + +## Curated Pi Stack + +Feynman loads a lean research stack from [.pi/settings.json](/Users/advaitpaliwal/Companion/Code/feynman/.pi/settings.json): + +- `pi-subagents` for parallel literature gathering and decomposition +- `pi-docparser` for PDFs, Office docs, spreadsheets, and images +- `pi-web-access` for broader web, GitHub, PDF, and media access +- `pi-markdown-preview` for polished Markdown and LaTeX-heavy research writeups +- `@kaiserlich-dev/pi-session-search` for recall across long-running research threads +- `@aliou/pi-processes` for long-running experiments and log tails +- `pi-wandb` for experiment tracking +- `pi-zotero` for citation-library workflows + +## Layout + +```text +feynman/ +├── extensions/ # Custom research tools +├── papers/ # Polished paper-style drafts and writeups +├── prompts/ # Slash-style prompt templates +├── skills/ # Research workflows +└── src/ # Minimal REPL wrapper around pi-coding-agent +``` diff --git a/experiments/.gitkeep b/experiments/.gitkeep new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/experiments/.gitkeep @@ -0,0 +1 @@ + diff --git a/extensions/research-tools.ts b/extensions/research-tools.ts new file mode 100644 index 0000000..f8c6be9 --- /dev/null +++ b/extensions/research-tools.ts @@ -0,0 +1,171 @@ +import { + annotatePaper, + askPaper, + clearPaperAnnotation, + disconnect, + getPaper, + listPaperAnnotations, + readPaperCode, + searchPapers, +} from "@companion-ai/alpha-hub/lib"; +import type { ExtensionAPI } from "@mariozechner/pi-coding-agent"; +import { Type } from "@sinclair/typebox"; + +function formatToolText(result: unknown): string { + return typeof result === "string" ? result : JSON.stringify(result, null, 2); +} + +export default function researchTools(pi: ExtensionAPI): void { + pi.registerTool({ + name: "alpha_search", + label: "Alpha Search", + description: "Search papers through alphaXiv using semantic, keyword, both, agentic, or all retrieval modes.", + parameters: Type.Object({ + query: Type.String({ description: "Paper search query." }), + mode: Type.Optional( + Type.String({ + description: "Search mode: semantic, keyword, both, agentic, or all.", + }), + ), + }), + async execute(_toolCallId, params) { + try { + const result = await searchPapers(params.query, params.mode?.trim() || "all"); + return { + content: [{ type: "text", text: formatToolText(result) }], + details: result, + }; + } finally { + await disconnect(); + } + }, + }); + + pi.registerTool({ + name: "alpha_get_paper", + label: "Alpha Get Paper", + description: "Fetch a paper report or full text, plus any local annotation, using alphaXiv.", + parameters: Type.Object({ + paper: Type.String({ + description: "arXiv ID, arXiv URL, or alphaXiv URL.", + }), + fullText: Type.Optional( + Type.Boolean({ + description: "Return raw full text instead of the AI report.", + }), + ), + }), + async execute(_toolCallId, params) { + try { + const result = await getPaper(params.paper, { fullText: params.fullText }); + return { + content: [{ type: "text", text: formatToolText(result) }], + details: result, + }; + } finally { + await disconnect(); + } + }, + }); + + pi.registerTool({ + name: "alpha_ask_paper", + label: "Alpha Ask Paper", + description: "Ask a targeted question about a paper using alphaXiv's PDF analysis.", + parameters: Type.Object({ + paper: Type.String({ + description: "arXiv ID, arXiv URL, or alphaXiv URL.", + }), + question: Type.String({ + description: "Question to ask about the paper.", + }), + }), + async execute(_toolCallId, params) { + try { + const result = await askPaper(params.paper, params.question); + return { + content: [{ type: "text", text: formatToolText(result) }], + details: result, + }; + } finally { + await disconnect(); + } + }, + }); + + pi.registerTool({ + name: "alpha_annotate_paper", + label: "Alpha Annotate Paper", + description: "Write or clear a persistent local annotation for a paper.", + parameters: Type.Object({ + paper: Type.String({ + description: "Paper ID to annotate.", + }), + note: Type.Optional( + Type.String({ + description: "Annotation text. Omit when clear=true.", + }), + ), + clear: Type.Optional( + Type.Boolean({ + description: "Clear the existing annotation instead of writing one.", + }), + ), + }), + async execute(_toolCallId, params) { + const result = params.clear + ? await clearPaperAnnotation(params.paper) + : params.note + ? await annotatePaper(params.paper, params.note) + : (() => { + throw new Error("Provide either note or clear=true."); + })(); + + return { + content: [{ type: "text", text: formatToolText(result) }], + details: result, + }; + }, + }); + + pi.registerTool({ + name: "alpha_list_annotations", + label: "Alpha List Annotations", + description: "List all persistent local paper annotations.", + parameters: Type.Object({}), + async execute() { + const result = await listPaperAnnotations(); + return { + content: [{ type: "text", text: formatToolText(result) }], + details: result, + }; + }, + }); + + pi.registerTool({ + name: "alpha_read_code", + label: "Alpha Read Code", + description: "Read files from a paper's GitHub repository through alphaXiv.", + parameters: Type.Object({ + githubUrl: Type.String({ + description: "GitHub repository URL for the paper implementation.", + }), + path: Type.Optional( + Type.String({ + description: "Repository path to inspect. Use / for the repo overview.", + }), + ), + }), + async execute(_toolCallId, params) { + try { + const result = await readPaperCode(params.githubUrl, params.path?.trim() || "/"); + return { + content: [{ type: "text", text: formatToolText(result) }], + details: result, + }; + } finally { + await disconnect(); + } + }, + }); +} diff --git a/notes/.gitkeep b/notes/.gitkeep new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/notes/.gitkeep @@ -0,0 +1 @@ + diff --git a/outputs/.gitkeep b/outputs/.gitkeep new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/outputs/.gitkeep @@ -0,0 +1 @@ + diff --git a/package-lock.json b/package-lock.json new file mode 100644 index 0000000..e2d8171 --- /dev/null +++ b/package-lock.json @@ -0,0 +1,4117 @@ +{ + "name": "feynman", + "version": "0.1.0", + "lockfileVersion": 3, + "requires": true, + "packages": { + "": { + "name": "feynman", + "version": "0.1.0", + "dependencies": { + "@companion-ai/alpha-hub": "file:../alpha-hub/cli", + 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"@mariozechner/pi-coding-agent": "^0.56.1", + "@sinclair/typebox": "^0.34.41", + "dotenv": "^16.4.7" + }, + "devDependencies": { + "@types/node": "^24.3.0", + "tsx": "^4.20.5", + "typescript": "^5.7.3" + }, + "engines": { + "node": ">=20.6.0" + } +} diff --git a/papers/.gitkeep b/papers/.gitkeep new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/papers/.gitkeep @@ -0,0 +1 @@ + diff --git a/prompts/lit-review.md b/prompts/lit-review.md new file mode 100644 index 0000000..64f0cb5 --- /dev/null +++ b/prompts/lit-review.md @@ -0,0 +1,13 @@ +--- +description: Run a literature review on a topic using paper search and primary-source synthesis. +--- +Investigate the following topic as a literature review: $@ + +Requirements: +- Use `alpha_search` first. +- Use `alpha_get_paper` on the most relevant papers before making strong claims. +- Use `alpha_ask_paper` for targeted follow-up questions when the report is not enough. +- Prefer primary sources and note when something appears to be a preprint or secondary summary. +- Separate consensus, disagreements, and open questions. +- When useful, propose concrete next experiments or follow-up reading. +- If the user wants an artifact, write the review to disk as markdown. diff --git a/prompts/paper-code-audit.md b/prompts/paper-code-audit.md new file mode 100644 index 0000000..842c0d5 --- /dev/null +++ b/prompts/paper-code-audit.md @@ -0,0 +1,12 @@ +--- +description: Compare a paper's claims against its public codebase and identify mismatches, omissions, and reproducibility risks. +--- +Audit the paper and codebase for: $@ + +Requirements: +- Identify the canonical paper first with `alpha_search` and `alpha_get_paper`. +- Extract implementation-sensitive claims with `alpha_ask_paper`. +- If a public repo exists, inspect it with `alpha_read_code`. +- Compare claimed methods, defaults, metrics, and data handling against the repository. +- Call out missing code, mismatches, ambiguous defaults, and reproduction risks. +- Save the audit to `outputs/` as markdown. diff --git a/prompts/paper-draft.md b/prompts/paper-draft.md new file mode 100644 index 0000000..6e68866 --- /dev/null +++ b/prompts/paper-draft.md @@ -0,0 +1,19 @@ +--- +description: Turn research findings into a polished paper-style draft with equations, sections, and explicit claims. +--- +Write a paper-style draft for: $@ + +Requirements: +- Ground every claim in inspected sources, experiments, or explicit inference. +- Use clean Markdown structure with LaTeX where equations materially help. +- Include at minimum: + - title + - abstract + - problem statement + - related work + - method or synthesis + - evidence or experiments + - limitations + - conclusion +- If citations are available, include citation placeholders or references clearly enough to convert later. +- Save the draft to `papers/` as markdown. diff --git a/prompts/reading-list.md b/prompts/reading-list.md new file mode 100644 index 0000000..9628fbb --- /dev/null +++ b/prompts/reading-list.md @@ -0,0 +1,12 @@ +--- +description: Build a prioritized reading list on a research topic with rationale for each paper. +--- +Create a research reading list for: $@ + +Requirements: +- Use `alpha_search` with `all` mode. +- Inspect the strongest papers with `alpha_get_paper`. +- Use `alpha_ask_paper` when a paper's fit is unclear. +- Group papers by role when useful: foundational, strongest recent work, methods, benchmarks, critiques, replication targets. +- For each paper, explain why it is on the list. +- Save the final reading list to `outputs/` as markdown. diff --git a/prompts/replicate.md b/prompts/replicate.md new file mode 100644 index 0000000..506cfd4 --- /dev/null +++ b/prompts/replicate.md @@ -0,0 +1,14 @@ +--- +description: Plan or execute a replication workflow for a paper, claim, or benchmark. +--- +Design a replication plan for: $@ + +Requirements: +- Identify the canonical paper or source material first. +- Use `alpha_get_paper` for the target paper. +- Use `alpha_ask_paper` to extract the exact implementation or evaluation details you still need. +- If the paper links code, inspect it with `alpha_read_code`. +- Determine what code, datasets, metrics, and environment are needed. +- If enough information is available locally, implement and run the replication steps. +- Save notes, scripts, and results to disk in a reproducible layout. +- Be explicit about what is verified, what is inferred, and what is still missing. diff --git a/skills/research/experiment-design/SKILL.md b/skills/research/experiment-design/SKILL.md new file mode 100644 index 0000000..7ac7baa --- /dev/null +++ b/skills/research/experiment-design/SKILL.md @@ -0,0 +1,48 @@ +--- +name: experiment-design +description: Use this when the task is to turn a vague research idea into a testable experiment, define metrics, choose baselines, or plan ablations. +--- + +# Experiment Design + +## When To Use + +Use this skill when the user has: +- a hypothesis to test +- a method to evaluate +- an unclear benchmark plan +- a need for baselines, ablations, or metrics + +## Procedure + +1. Restate the research question as a falsifiable claim. +2. Define: + - independent variables + - dependent variables + - success metrics + - baselines + - constraints +3. Search for prior work first with `alpha_search` so you do not reinvent an obviously flawed setup. +4. Use `alpha_get_paper` and `alpha_ask_paper` on the strongest references. +5. Prefer the smallest experiment that can meaningfully reduce uncertainty. +6. List confounders and failure modes up front. +7. If implementation is requested, create the scripts, configs, and logging plan. +8. Write the plan to disk before running expensive work. + +## Pitfalls + +- Avoid experiments with no baseline. +- Avoid metrics that do not connect to the claim. +- Avoid ablations that change multiple variables at once. +- Avoid broad plans that cannot be executed with the current environment. + +## Deliverable + +Produce: +- hypothesis +- setup +- baselines +- metrics +- ablations +- risks +- next action diff --git a/skills/research/literature-review/SKILL.md b/skills/research/literature-review/SKILL.md new file mode 100644 index 0000000..b4bc2be --- /dev/null +++ b/skills/research/literature-review/SKILL.md @@ -0,0 +1,52 @@ +--- +name: literature-review +description: Use this when the task is to survey prior work, compare papers, synthesize a field, or build a reading list grounded in primary sources. +--- + +# Literature Review + +## When To Use + +Use this skill when the user wants: +- a research overview +- a paper shortlist +- a comparison of methods +- a synthesis of consensus and disagreement +- a source-backed brief on a topic + +## Procedure + +1. Search broadly first with `alpha_search`. +2. Pick the strongest candidates by direct relevance, recency, citations, and venue quality. +3. Inspect the top papers with `alpha_get_paper` before making concrete claims. +4. Use `alpha_ask_paper` for missing methodological or experimental details. +5. Build a compact evidence table: + - title + - year + - authors + - venue + - claim or contribution + - important caveats +6. Distinguish: + - what multiple sources agree on + - where methods or findings differ + - what remains unresolved +7. If the user wants a durable artifact, write a markdown brief to disk. +8. If you discover an important gotcha about a paper, save it with `alpha_annotate_paper`. + +## Pitfalls + +- Do not summarize a field from titles alone. +- Do not flatten disagreements into fake consensus. +- Do not treat recent preprints as established facts without saying so. +- Do not cite secondary commentary when a primary source is available. + +## Output Shape + +Prefer this structure: +- question +- strongest papers +- major findings +- disagreements or caveats +- open questions +- recommended next reading or experiments diff --git a/skills/research/paper-code-audit/SKILL.md b/skills/research/paper-code-audit/SKILL.md new file mode 100644 index 0000000..ea570cf --- /dev/null +++ b/skills/research/paper-code-audit/SKILL.md @@ -0,0 +1,50 @@ +--- +name: paper-code-audit +description: Use this when the task is to compare a paper against its repository, verify whether claims are implemented, or assess reproducibility risk. +--- + +# Paper Code Audit + +## When To Use + +Use this skill for: +- paper-versus-code verification +- implementation gap analysis +- reproducibility audits +- checking whether public code matches reported results + +## Procedure + +1. Locate the paper with `alpha_search`. +2. Load the paper with `alpha_get_paper`. +3. Extract implementation-relevant details using `alpha_ask_paper`: + - datasets + - preprocessing + - model architecture + - hyperparameters + - evaluation protocol +4. If the paper links a repository, inspect it using `alpha_read_code`. +5. Compare paper claims against code realities: + - are all components present + - do defaults match the paper + - are metrics/eval scripts exposed + - are hidden assumptions required +6. Record concrete mismatches, not vibes. +7. Save the audit in `outputs/`. +8. If you find a durable gotcha, save it with `alpha_annotate_paper`. + +## Pitfalls + +- Do not infer repository behavior without opening the relevant files. +- Do not assume README claims reflect the actual defaults. +- Do not mark something as missing if it exists under another name without checking. + +## Deliverable + +Include: +- paper summary +- repository coverage +- confirmed matches +- mismatches or omissions +- reproducibility risks +- recommended next actions diff --git a/skills/research/paper-writing/SKILL.md b/skills/research/paper-writing/SKILL.md new file mode 100644 index 0000000..0068da5 --- /dev/null +++ b/skills/research/paper-writing/SKILL.md @@ -0,0 +1,45 @@ +--- +name: paper-writing +description: Use this when the task is to turn research notes, experiments, or a literature review into a polished paper-style writeup with Markdown and LaTeX. +--- + +# Paper Writing + +## When To Use + +Use this skill for: +- research reports that should read like a paper +- internal memos with equations or formal structure +- polished writeups of experiments or literature reviews +- converting rough notes into a coherent draft + +## Procedure + +1. Make sure the underlying claims are already grounded in sources, experiments, or explicit caveats. +2. Build the draft around a proper research structure: + - title + - abstract + - introduction or problem statement + - related work + - approach, synthesis, or methodology + - evidence, experiments, or case studies + - limitations + - conclusion +3. Use Markdown by default. +4. Use LaTeX only where equations or notation genuinely improve clarity. +5. Keep claims falsifiable and scoped. +6. Save polished drafts to `papers/`. + +## Pitfalls + +- Do not use LaTeX for decoration. +- Do not make a draft look more certain than the evidence supports. +- Do not hide missing citations or weak evidence; flag them. + +## Deliverable + +A readable paper-style draft with: +- explicit structure +- traceable claims +- equations only where useful +- limitations stated plainly diff --git a/skills/research/reading-list/SKILL.md b/skills/research/reading-list/SKILL.md new file mode 100644 index 0000000..72ecfa1 --- /dev/null +++ b/skills/research/reading-list/SKILL.md @@ -0,0 +1,49 @@ +--- +name: reading-list +description: Use this when the user wants a curated reading sequence, paper shortlist, or tiered set of papers for learning or project onboarding. +--- + +# Reading List + +## When To Use + +Use this skill for: +- getting up to speed on a topic +- onboarding into a research area +- choosing which papers to read first +- constructing a project-specific reading order + +## Procedure + +1. Start with `alpha_search` in `all` mode. +2. Inspect the strongest candidates with `alpha_get_paper`. +3. Use `alpha_ask_paper` for fit questions like: + - what problem does this really solve + - what assumptions does it rely on + - what prior work does it build on +4. Classify papers into roles: + - foundational + - key recent advances + - evaluation or benchmark references + - critiques or limitations + - likely replication targets +5. Order the list intentionally: + - start with orientation + - move to strongest methods + - finish with edges, critiques, or adjacent work +6. Write the final list as a durable markdown artifact in `outputs/`. + +## Pitfalls + +- Do not sort purely by citations. +- Do not over-index on recency when fundamentals matter. +- Do not include papers you have not inspected at all. + +## Deliverable + +For each paper include: +- title +- year +- why it matters +- when to read it in the sequence +- one caveat or limitation diff --git a/skills/research/replication/SKILL.md b/skills/research/replication/SKILL.md new file mode 100644 index 0000000..6190f30 --- /dev/null +++ b/skills/research/replication/SKILL.md @@ -0,0 +1,52 @@ +--- +name: replication +description: Use this when the task is to reproduce a paper result, benchmark a claim, rebuild an experiment, or evaluate whether a published result holds in practice. +--- + +# Replication + +## When To Use + +Use this skill for: +- paper reproduction +- benchmark recreation +- ablation reruns +- claim verification through code and experiments + +## Procedure + +1. Identify the canonical source paper and inspect it with `alpha_get_paper`. +2. Extract the exact target: + - task + - dataset + - model or method + - metrics + - hardware or runtime assumptions +3. Use `alpha_ask_paper` to pull out the exact details missing from the report. +4. If the paper has a public repository, inspect it with `alpha_read_code`. +5. Search the local workspace for existing code, notebooks, configs, and datasets. +6. Write down the missing pieces explicitly before running anything. +7. If the environment is sufficient, implement the minimal runnable reproduction path. +8. Run the experiment with built-in file and shell tools. +9. Save: + - commands used + - configs + - raw outputs + - summarized results +10. Compare observed results with the paper and explain gaps. +11. If the paper had a practical gotcha, attach it with `alpha_annotate_paper`. + +## Pitfalls + +- Do not claim replication succeeded if key conditions were missing. +- Do not compare different metrics as if they were equivalent. +- Do not ignore dataset or preprocessing mismatch. +- Do not hide failed runs; record them and explain them. + +## Verification + +A good replication outcome includes: +- the exact command path +- the data or config used +- the observed metrics +- a clear statement of match, partial match, or mismatch diff --git a/src/feynman-prompt.ts b/src/feynman-prompt.ts new file mode 100644 index 0000000..40daa35 --- /dev/null +++ b/src/feynman-prompt.ts @@ -0,0 +1,34 @@ +export const FEYNMAN_SYSTEM_PROMPT = `You are Feynman, a research-first AI agent. + +Your job is to investigate questions, read primary sources, design experiments, run them when useful, and produce reproducible written artifacts. + +Operating rules: +- Evidence over fluency. +- Prefer papers, official documentation, datasets, code, and direct experimental results over commentary. +- Separate observations from inferences. +- State uncertainty explicitly. +- When a claim depends on recent literature or unstable facts, use tools before answering. +- When discussing papers, cite title, year, and identifier or URL when possible. +- Use the alpha-backed research tools first for literature search, paper reading, paper Q&A, and persistent annotations. +- Use the installed Pi research packages for broader web/PDF access, document parsing, session recall, background processes, experiment tracking, citations, and delegated subtasks when they reduce friction. +- When an experiment is warranted, write the code or scripts, run them, capture outputs, and save artifacts to disk. +- Treat polished scientific communication as part of the job: structure reports cleanly, use Markdown deliberately, and use LaTeX math when equations clarify the argument. +- Default artifact locations: + - outputs/ for reviews, reading lists, and summaries + - experiments/ for runnable experiment code and result logs + - notes/ for scratch notes and intermediate synthesis + - papers/ for polished paper-style drafts and writeups +- Default deliverables should include: summary, strongest evidence, disagreements or gaps, open questions, and recommended next steps. + +Default workflow: +1. Clarify the research objective if needed. +2. Search for relevant primary sources. +3. Inspect the most relevant papers or materials directly. +4. Synthesize consensus, disagreements, and missing evidence. +5. Design and run experiments when they would resolve uncertainty. +6. Write the requested output artifact. + +Style: +- Concise, skeptical, and explicit. +- Avoid fake certainty. +- Do not present unverified claims as facts.`; diff --git a/src/index.ts b/src/index.ts new file mode 100644 index 0000000..4a1abed --- /dev/null +++ b/src/index.ts @@ -0,0 +1,212 @@ +import "dotenv/config"; + +import { mkdirSync } from "node:fs"; +import { stdin as input, stdout as output } from "node:process"; +import { dirname, resolve } from "node:path"; +import { parseArgs } from "node:util"; +import { fileURLToPath } from "node:url"; +import readline from "node:readline/promises"; + +import { + AuthStorage, + createAgentSession, + createCodingTools, + DefaultResourceLoader, + ModelRegistry, + SessionManager, + SettingsManager, +} from "@mariozechner/pi-coding-agent"; + +import { FEYNMAN_SYSTEM_PROMPT } from "./feynman-prompt.js"; + +type ThinkingLevel = "off" | "low" | "medium" | "high"; + +function printHelp(): void { + console.log(`Feynman commands: + /help Show this help + /new Start a fresh persisted session + /exit Quit the REPL + /lit-review Expand the literature review prompt template + /replicate Expand the replication prompt template + /reading-list Expand the reading list prompt template + /paper-code-audit Expand the paper/code audit prompt template + /paper-draft Expand the paper-style writing prompt template + + CLI flags: + --prompt "" Run one prompt and exit + --model provider:model Force a specific model + --thinking level off | low | medium | high + --cwd /path/to/workdir Working directory for tools + --session-dir /path Session storage directory`); +} + +function parseModelSpec(spec: string, modelRegistry: ModelRegistry) { + const trimmed = spec.trim(); + const separator = trimmed.includes(":") ? ":" : trimmed.includes("/") ? "/" : null; + if (!separator) { + return undefined; + } + + const [provider, ...rest] = trimmed.split(separator); + const id = rest.join(separator); + if (!provider || !id) { + return undefined; + } + + return modelRegistry.find(provider, id); +} + +function normalizeThinkingLevel(value: string | undefined): ThinkingLevel | undefined { + if (!value) { + return undefined; + } + + const normalized = value.toLowerCase(); + if (normalized === "off" || normalized === "low" || normalized === "medium" || normalized === "high") { + return normalized; + } + + return undefined; +} + +async function main(): Promise { + const here = dirname(fileURLToPath(import.meta.url)); + const appRoot = resolve(here, ".."); + + const { values, positionals } = parseArgs({ + allowPositionals: true, + options: { + cwd: { type: "string" }, + help: { type: "boolean" }, + model: { type: "string" }, + "new-session": { type: "boolean" }, + prompt: { type: "string" }, + "session-dir": { type: "string" }, + thinking: { type: "string" }, + }, + }); + + if (values.help) { + printHelp(); + return; + } + + const workingDir = resolve(values.cwd ?? process.cwd()); + const sessionDir = resolve(values["session-dir"] ?? resolve(appRoot, ".feynman", "sessions")); + mkdirSync(sessionDir, { recursive: true }); + const settingsManager = SettingsManager.create(appRoot); + + const authStorage = AuthStorage.create(); + const modelRegistry = new ModelRegistry(authStorage); + const explicitModelSpec = values.model ?? process.env.FEYNMAN_MODEL; + const explicitModel = explicitModelSpec ? parseModelSpec(explicitModelSpec, modelRegistry) : undefined; + + if (explicitModelSpec && !explicitModel) { + throw new Error(`Unknown model: ${explicitModelSpec}`); + } + + if (!explicitModel) { + const available = await modelRegistry.getAvailable(); + if (available.length === 0) { + throw new Error( + "No models are available. Configure pi auth or export a provider API key before starting Feynman.", + ); + } + } + + const thinkingLevel = normalizeThinkingLevel(values.thinking ?? process.env.FEYNMAN_THINKING) ?? "medium"; + + const resourceLoader = new DefaultResourceLoader({ + cwd: appRoot, + additionalExtensionPaths: [resolve(appRoot, "extensions")], + additionalPromptTemplatePaths: [resolve(appRoot, "prompts")], + additionalSkillPaths: [resolve(appRoot, "skills")], + settingsManager, + systemPromptOverride: () => FEYNMAN_SYSTEM_PROMPT, + appendSystemPromptOverride: () => [], + }); + await resourceLoader.reload(); + + const sessionManager = values["new-session"] + ? SessionManager.create(workingDir, sessionDir) + : SessionManager.continueRecent(workingDir, sessionDir); + + const { session } = await createAgentSession({ + authStorage, + cwd: workingDir, + model: explicitModel, + modelRegistry, + resourceLoader, + sessionManager, + settingsManager, + thinkingLevel, + tools: createCodingTools(workingDir), + }); + + session.subscribe((event) => { + if (event.type === "message_update" && event.assistantMessageEvent.type === "text_delta") { + process.stdout.write(event.assistantMessageEvent.delta); + return; + } + + if (event.type === "tool_execution_start") { + process.stderr.write(`\n[tool] ${event.toolName}\n`); + return; + } + + if (event.type === "tool_execution_end" && event.isError) { + process.stderr.write(`[tool-error] ${event.toolName}\n`); + } + }); + + const initialPrompt = values.prompt ?? (positionals.length > 0 ? positionals.join(" ") : undefined); + + if (initialPrompt) { + await session.prompt(initialPrompt); + process.stdout.write("\n"); + session.dispose(); + return; + } + + console.log("Feynman research agent"); + console.log(`working dir: ${workingDir}`); + console.log(`session dir: ${sessionDir}`); + console.log("type /help for commands"); + + const rl = readline.createInterface({ input, output }); + + try { + while (true) { + const line = (await rl.question("feynman> ")).trim(); + if (!line) { + continue; + } + + if (line === "/exit" || line === "/quit") { + break; + } + + if (line === "/help") { + printHelp(); + continue; + } + + if (line === "/new") { + await session.newSession(); + console.log("started a new session"); + continue; + } + + await session.prompt(line); + process.stdout.write("\n"); + } + } finally { + rl.close(); + session.dispose(); + } +} + +main().catch((error) => { + console.error(error instanceof Error ? error.message : String(error)); + process.exitCode = 1; +}); diff --git a/tsconfig.json b/tsconfig.json new file mode 100644 index 0000000..8f9f3d9 --- /dev/null +++ b/tsconfig.json @@ -0,0 +1,19 @@ +{ + "compilerOptions": { + "target": "ES2022", + "module": "NodeNext", + "moduleResolution": "NodeNext", + "strict": true, + "skipLibCheck": true, + "allowSyntheticDefaultImports": true, + "esModuleInterop": true, + "types": [ + "node" + ], + "noEmit": true + }, + "include": [ + "src/**/*.ts", + "extensions/**/*.ts" + ] +}