Files
geoclustering/geocluster/io.py
2022-06-30 13:53:48 +02:00

79 lines
2.2 KiB
Python

from keplergl import KeplerGl
from pathlib import Path
from pkg_resources import resource_filename
import json
import json
import pandas as pd
import numpy as np
def is_valid_lat(val: str) -> bool:
"""Given a string, check if it corresponds to a valid decimal latitude value"""
try:
val = float(val)
return val >= -90 and val <= 90
except:
return False
def is_valid_lon(val: str) -> bool:
"""Given a string, check if it corresponds to a valid decimal longitude value"""
try:
val = float(val)
return val >= -180 and val <= 180
except:
return False
def read_csv_file(filename):
"""Read input csv file, dropping rows that don't have valid location data."""
df = pd.read_csv(filename)
initial_rows = len(df)
df = df.dropna(subset=["lat", "lon"])
df = df.replace(
{np.nan: None}
) # replace for other fields not to break kepler parsing
print(f"Ignored {initial_rows - len(df)} coordinates with NaN")
valid_index = df.lat.astype(str).apply(is_valid_lat) & df.lon.astype(str).apply(
is_valid_lon
)
if len(df_invalid := df[~valid_index]):
print(f"Found {len(df_invalid)} invalid coordinate pairs, ignoring:")
print(df_invalid[["lat", "lon"]].to_string())
return df[valid_index]
def ensure_file_path(dirname, filename):
"""Ensure a parent directory exists for a file."""
path = Path(dirname)
path.mkdir(parents=True, exist_ok=True)
return path / filename
def write_output_file(dirname, filename, data):
"""Write a file, ensuring parent directories."""
filepath = ensure_file_path(dirname, filename)
with open(filepath, "w") as f:
f.write(data)
return filepath
def write_visualization(dirname, filename, data):
"""Write a visualization, ensuring parent directories."""
map = KeplerGl()
map.add_data(data=data, name="clusters")
# config configures a default color scheme for our clusters layer.
config_file = resource_filename("geocluster", "kepler_config.json")
with open(config_file) as f:
map.config = json.loads(f.read())
filepath = ensure_file_path(dirname, filename)
map.save_to_html(file_name=str(filepath), center_map=True)
return filepath