Add new output format: csv with cluster info (#18)

Co-authored-by: msramalho <19508417+msramalho@users.noreply.github.com>

Pipfile

@@ -16,6 +16,7 @@ black = "*"
 pre-commit = "*"
 pytest = "*"
 wheel = "*"
+geoclustering = {editable = true, path = "."}
 
 [requires]
 python_version = "3.9"

README.md

@@ -72,7 +72,7 @@ id,name,lat,lon
 
 ## Output
 
-If at least one cluster was found, the tool outputs a folder with output as `json`, `geojson`, `txt` files. A kepler.gl `html` file is generated as well.
+If at least one cluster was found, the tool outputs a folder with output as `json`, `geojson`, `txt`, `csv` files. A kepler.gl `html` file is generated as well.
 
 ### JSON
 
@@ -132,6 +132,16 @@ id 9, name Rosanna Foggo, lat -6.2074293, lon 106.8915948
 // ...
 ```
 
+### CSV
+
+Encodes each event in one line with `cluster_id` information associated.
+
+```csv
+cluster_id,name,lat,lon
+9,Rosanna Foggo,-6.2074293,106.8915948
+...
+```
+
 ### kepler.gl
 
 ![kepler.gl instance](https://user-images.githubusercontent.com/1682504/176478177-c0446b51-4060-495c-803d-79e2bbd3e966.png)

geoclustering/__main__.py

@@ -68,10 +68,10 @@ def main(distance, size, output, filename, algorithm, _open, debug):
     print_debug(f"Found {len(clusters)} valid clusters using {algorithm}")
 
     encoded = encoding.encode_clusters(clusters)
-
     io.write_output_file(output, "result.txt", encoded["string"])
     io.write_output_file(output, "result.json", encoded["json"])
     io.write_output_file(output, "result.geojson", encoded["geojson"])
+    io.write_output_file(output, "result.csv", encoded["csv"])
 
     vis = io.write_visualization(output, "result.html", encoded["geojson"])
     if vis is None:

geoclustering/encoding.py

@@ -1,6 +1,8 @@
 import json
 import numpy as np
 import geojson
+import csv
+import io  # not io.py
 
 
 class NpEncoder(json.JSONEncoder):
@@ -74,13 +76,36 @@ class GeoJSONEncoder:
         return json.dumps(geojson.FeatureCollection(self.state), cls=NpEncoder)
 
 
+class CSVEncoder:
+    """Encodes clustering result as a CSV"""
+
+    def __init__(self):
+        self.state = io.StringIO()
+        self.writer = False
+
+    def visitor(self, cluster_id, cluster):
+        if not self.writer:
+            self.writer = csv.DictWriter(
+                self.state,
+                fieldnames=["cluster_id"] + list(cluster[0].keys()),
+                quoting=csv.QUOTE_NONNUMERIC,
+            )
+            self.writer.writeheader()
+
+        for record in cluster:
+            self.writer.writerow({**record, "cluster_id": cluster_id})
+
+    def get(self):
+        return self.state.getvalue()
+
+
 def encode_clusters(clusters):
     json_encoder = JSONEncoder()
     geojson_encoder = GeoJSONEncoder()
     string_encoder = StringEncoder()
+    csv_encoder = CSVEncoder()
 
-    encoders = [json_encoder, geojson_encoder, string_encoder]
+    encoders = [json_encoder, geojson_encoder, string_encoder, csv_encoder]
-
     for cluster_id, cluster in clusters.items():
         for encoder in encoders:
             encoder.visitor(cluster_id, cluster)
@@ -89,4 +114,5 @@ def encode_clusters(clusters):
         "json": json_encoder.get(),
         "geojson": geojson_encoder.get(),
         "string": string_encoder.get(),
+        "csv": csv_encoder.get(),
     }

tests/fixtures/snapshots/result.json

@@ -1 +1 @@
-[{"cluster_id": 0, "points": [{"id": 1, "name": "Alice", "lat": 52.523955, "lon": 13.442362}, {"id": 2, "name": "Bob", "lat": 52.526659, "lon": 13.448097}]}, {"cluster_id": 0, "points": [{"id": 1, "name": "Alice", "lat": 52.523955, "lon": 13.442362}, {"id": 2, "name": "Bob", "lat": 52.526659, "lon": 13.448097}]}, {"cluster_id": 1, "points": [{"id": 3, "name": "Carol", "lat": 52.525626, "lon": 13.419246}, {"id": 4, "name": "Dan", "lat": 52.52443559865125, "lon": 13.41261723049818}]}, {"cluster_id": 1, "points": [{"id": 3, "name": "Carol", "lat": 52.525626, "lon": 13.419246}, {"id": 4, "name": "Dan", "lat": 52.52443559865125, "lon": 13.41261723049818}]}]
+[{"cluster_id": 0, "points": [{"id": 1, "name": "Alice", "lat": 52.523955, "lon": 13.442362}, {"id": 2, "name": "Bob", "lat": 52.526659, "lon": 13.448097}]}, {"cluster_id": 1, "points": [{"id": 3, "name": "Carol", "lat": 52.525626, "lon": 13.419246}, {"id": 4, "name": "Dan", "lat": 52.52443559865125, "lon": 13.41261723049818}]}]