Start fleshing out the docs more - rearrange, separate out modules section, move files over to md (from rst)

docs/source/installation/configurations.rst

@@ -0,0 +1,41 @@
+
+Configurations
+==============
+
+
+```{toctree}
+:hidden:
+
+configurations
+```
+
+This section of the documentation provides guidelines for configuring the tool.
+
+File Reference
+--------------
+
+
+Below is the content of the `example.orchestration.yaml` file:
+
+.. raw:: html
+
+    <details>
+    <summary>View example.orchestration.yaml</summary>
+
+.. literalinclude:: ../../example.orchestration.yaml
+   :language: yaml
+   :caption: example.orchestration.yaml
+
+.. raw:: html
+
+    </details>
+
+
+Configs
+-------
+
+This section of the documentation will show the custom configurations for the individual steps of the tool.
+
+.. include:: _auto/configs.rst
+
+